SMTL ID : 1z9t.1

CRYSTAL STRUCTURE OF A PUTATIVE LACCASE (YFIH) FROM ESCHERICHIA COLI AT 1.54 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: E.175, V.176, G.177, K.201, R.240 Ligands: EDO.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.176, A:G.177 Water bridges: A:G.178 Salt bridges: A:K.201, A:K.201, A:K.201, A:R.240 CIT.2: 9 residues within 4Å: Chain A: H.83, M.115, T.116, A.117, D.118, C.119, H.136, Y.239, R.247 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.239 Hydrogen bonds: A:A.117, A:C.119, A:R.247, A:R.247 Water bridges: A:Q.81, A:Q.81 Salt bridges: A:H.83, A:H.83, A:H.136, A:H.136, A:R.247

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: V.217 Ligands: EDO.12 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: R.34, I.35, G.36, D.44, S.45 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: P.22, P.24, R.127 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: P.171, A.193, A.194, I.196, L.203, D.205 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: V.18, A.29, G.70, W.253 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: W.78, L.79, Q.81, M.115 Ligands: EDO.14 Ligand excluded by PLIP EDO.9: 9 residues within 4Å: Chain A: D.118, C.119, L.120, A.137, G.138, W.139, I.169, F.174, I.206 Ligand excluded by PLIP EDO.10: 1 residues within 4Å: Chain A: D.44 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: D.205, Y.207, R.211, G.225 Ligands: EDO.15, EDO.20 Ligand excluded by PLIP EDO.12: 8 residues within 4Å: Chain A: V.151, S.152, F.154, D.156, N.157, P.158, I.161 Ligands: EDO.3 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: R.140, C.143, A.144 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: A.50, R.63, W.78, L.79 Ligands: EDO.8 Ligand excluded by PLIP EDO.15: 9 residues within 4Å: Chain A: G.170, P.171, Y.207, G.225, D.226, R.227, C.228 Ligands: EDO.11, EDO.20 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: Y.230, T.231, N.233, R.241 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: A.50, P.56, V.59, E.60, R.63 Ligands: EDO.18 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: E.60, K.64, F.67 Ligands: EDO.17 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain A: F.67, L.72, S.74, K.75 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: G.224, G.225, D.226 Ligands: EDO.11, EDO.15 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain A: W.139, F.174, E.175, V.176, R.240 Ligands: CIT.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Hypothetical UPF0124 protein yfiH (np_417084.1) from Escherichia coli K12 at 1.54 A resolution. To be published

Release Date

2005-04-12

Peptides

Hypothetical UPF0124 protein yfiH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical UPF0124 protein yfiH