SMTL ID : 1za5.1

Q69H-FeSOD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.26, H.73, D.156, H.160 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.26, A:H.73, A:D.156, A:H.160, H2O.1 FE.4: 4 residues within 4Å: Chain B: H.26, H.73, D.156, H.160 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.26, B:H.73, B:D.156, B:H.160, H2O.9

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: K.50, S.51, E.54 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.51, A:E.54, A:E.54 Water bridges: A:S.51 TRS.3: 4 residues within 4Å: Chain A: P.16, S.19, D.165, Y.166 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.19, A:S.19, A:D.165 Water bridges: A:Y.166, A:H.176 TRS.5: 4 residues within 4Å: Chain B: G.49, K.50, S.51, E.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.49, B:K.50, B:K.50 TRS.6: 4 residues within 4Å: Chain B: I.56, R.57, S.58, S.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.59 Water bridges: B:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yikilmaz, E. et al., The Crucial Importance of Chemistry in the Structure-Function Link: Manipulating Hydrogen Bonding in Iron-Containing Superoxide Dismutase. Biochemistry (2006)

Release Date

2006-03-14

Peptides

Superoxide dismutase [Fe]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Fe]