SMTL ID : 1zak.1

ADENYLATE KINASE FROM MAIZE IN COMPLEX WITH THE INHIBITOR P1,P5-BIS(ADENOSINE-5'-)PENTAPHOSPHATE (AP5A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-dimer

Ligands

2 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 31 residues within 4Å: Chain A: P.14, A.15, S.16, G.17, K.18, G.19, T.20, A.36, G.37, L.40, R.41, M.58, Q.62, L.63, V.64, V.69, G.91, Y.92, R.94, Q.98, R.125, R.129, I.138, Y.139, H.140, Y.143, R.158, R.169, G.193, A.195, V.197 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:A.15, A:S.16, A:G.17, A:K.18, A:G.19, A:T.20, A:T.20, A:Q.62, A:V.64, A:Q.98, A:Q.98, A:R.125, A:R.125, A:R.125, A:Y.139, A:R.158, A:R.158, A:R.169, A:A.195 Salt bridges: A:K.18, A:K.18, A:K.18, A:R.41, A:R.94, A:R.94, A:R.129, A:R.158, A:R.169 pi-Cation interactions: A:R.125, A:R.125 AP5.2: 31 residues within 4Å: Chain B: P.14, A.15, S.16, G.17, K.18, G.19, T.20, A.36, G.37, L.40, R.41, M.58, Q.62, L.63, V.64, V.69, G.91, Y.92, R.94, Q.98, R.125, R.129, I.138, Y.139, H.140, Y.143, R.158, R.169, G.193, A.195, V.197 30 PLIP interactions: 30 interactions with chain B Hydrogen bonds: B:A.15, B:S.16, B:G.17, B:K.18, B:G.19, B:T.20, B:T.20, B:Q.62, B:V.64, B:Q.98, B:Q.98, B:R.125, B:R.125, B:R.125, B:Y.139, B:R.158, B:R.158, B:R.169, B:A.195 Salt bridges: B:K.18, B:K.18, B:K.18, B:R.41, B:R.94, B:R.94, B:R.129, B:R.158, B:R.169 pi-Cation interactions: B:R.125, B:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wild, K. et al., Structure, catalysis and supramolecular assembly of adenylate kinase from maize. Eur.J.Biochem. (1997)

Release Date

1998-04-08

Peptides

ADENYLATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADENYLATE KINASE