SMTL ID : 1zb6.1

Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.62, K.118 Ligands: GST.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.62, H2O.4, H2O.4, H2O.5

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 3 residues within 4Å: Chain A: N.128, M.129, E.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.128, A:M.129, A:E.134 Water bridges: A:N.128

1 x GST: GERANYL S-THIOLODIPHOSPHATE(Non-covalent)

GST.3: 15 residues within 4Å: Chain A: V.47, S.64, D.110, K.119, Y.121, F.123, M.162, N.173, Y.175, Y.216, T.218, R.228, K.284 Ligands: MG.1, DIN.4 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.121, A:F.123, A:Y.175 Hydrogen bonds: A:N.173, A:Y.216 Water bridges: A:S.51, A:K.118, A:K.118, A:K.118, A:K.119, A:K.119, A:D.166, A:R.228, A:R.228, A:R.228, A:K.284 Salt bridges: A:K.119, A:R.228, A:K.284

1 x DIN: 1,6-DIHYDROXY NAPHTHALENE(Non-covalent)

DIN.4: 7 residues within 4Å: Chain A: Y.175, F.213, S.214, Y.216, V.271, Y.288 Ligands: GST.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.175, A:F.213, A:Y.216, A:V.271 Water bridges: A:S.51, A:S.51, A:Y.272, A:G.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzuyama, T. et al., Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. Nature (2005)

Release Date

2005-06-21

Peptides

Aromatic prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aromatic prenyltransferase

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