SMTL ID : 1zbi.1

Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: A.9, U.10 Chain C: D.17, E.55, N.78 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.17, C:E.55, C:E.55, H2O.5 MG.2: 4 residues within 4Å: Chain A: U.10 Chain C: D.17, E.134, D.138 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.17, C:E.134, C:D.138, H2O.3, H2O.3 MG.3: 5 residues within 4Å: Chain A: A.4, C.5 Chain D: D.17, E.55, N.78 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.17, D:E.55, D:E.55, H2O.8 MG.4: 4 residues within 4Å: Chain A: C.5 Chain D: D.17, E.134, D.138 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.17, D:E.134, D:D.138, H2O.1, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowotny, M. et al., Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis. Cell(Cambridge,Mass.) (2005)

Release Date

2005-07-12

Peptides

ribonuclease H-related protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

ribonuclease H-related protein

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