SMTL ID : 1zcw.1

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.62 Ligands: GPP.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.62, H2O.3, H2O.3

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: G.44, G.45, T.292, D.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.293 Water bridges: A:R.296 NO3.3: 4 residues within 4Å: Chain A: K.207, F.208, R.211, L.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.211, A:L.240

1 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.4: 12 residues within 4Å: Chain A: V.47, S.64, S.66, K.119, Y.121, F.123, N.173, Y.175, Y.216, R.228, K.284 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.47, A:Y.121, A:F.123 Hydrogen bonds: A:Y.121, A:N.173, A:Y.175, A:Y.216 Water bridges: A:S.51, A:D.110, A:K.118, A:R.228, A:R.228 Salt bridges: A:K.119, A:K.119, A:R.228, A:K.284, A:K.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzuyama, T. et al., Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. Nature (2005)

Release Date

2005-06-21

Peptides

Aromatic prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aromatic prenyltransferase

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