SMTL ID : 1zdw.1

Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.62, K.118 Ligands: GST.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.62, H2O.3, H2O.3, H2O.3, H2O.3

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 4 residues within 4Å: Chain A: K.207, F.208, R.211, L.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.211 Water bridges: A:K.207

1 x FLV: FLAVIOLIN(Non-covalent)

FLV.3: 11 residues within 4Å: Chain A: Q.161, M.162, Y.175, F.213, S.214, Y.216, Y.288, V.294, Q.295, L.298 Ligands: GST.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.294, A:L.298 Hydrogen bonds: A:S.214, A:Y.288, A:Y.288 Water bridges: A:F.176, A:S.177 pi-Stacking: A:F.213

1 x GST: GERANYL S-THIOLODIPHOSPHATE(Non-covalent)

GST.4: 16 residues within 4Å: Chain A: V.47, S.64, S.66, A.108, K.119, Y.121, F.123, M.162, N.173, Y.175, Y.216, T.218, R.228, K.284 Ligands: MG.1, FLV.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.108, A:Y.121, A:F.123, A:Y.175 Hydrogen bonds: A:N.173, A:Y.216, A:K.284, A:K.284 Water bridges: A:S.51, A:S.51, A:K.118, A:K.118, A:K.118, A:K.119, A:D.166, A:R.228, A:R.228, A:R.228 Salt bridges: A:K.119, A:R.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzuyama, T. et al., Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. Nature (2005)

Release Date

2005-06-21

Peptides

Aromatic prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aromatic prenyltransferase

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