SMTL ID : 1zfn.1 (3 other biounits)

Structural Analysis of Escherichia coli ThiF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.171, C.174, C.242, C.245 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.171, A:C.174, A:C.242 ZN.3: 6 residues within 4Å: Chain B: C.171, R.173, C.174, C.242, V.244, C.245 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.171, B:C.174, B:C.242, B:C.245

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: I.36, G.37, L.38, G.39, G.40, A.60, D.61, D.63, S.68, N.69, R.72, Q.73, K.85, Q.107, R.108, L.109, C.127, T.128, D.129, T.133 Chain B: R.13 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.38, A:G.40, A:D.63, A:D.63, A:S.68, A:Q.73, A:K.85, A:L.109, A:L.109, A:T.133 Salt bridges: A:R.72, A:R.72, A:R.72, A:K.85, B:R.13 ATP.4: 21 residues within 4Å: Chain A: R.13 Chain B: I.36, G.37, L.38, G.39, G.40, A.60, D.61, D.63, S.68, N.69, R.72, Q.73, K.85, Q.107, R.108, L.109, C.127, T.128, D.129, T.133 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.38, B:L.38, B:G.40, B:D.61, B:D.63, B:D.63, B:S.68, B:Q.73, B:L.109, B:L.109, B:T.133 Salt bridges: B:R.72, B:R.72, B:R.72, B:K.85, A:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duda, D.M. et al., Structural Analysis of Escherichia Coli ThiF. J.Mol.Biol. (2005)

Release Date

2005-06-14

Peptides

Adenylyltransferase thiF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenylyltransferase thiF

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