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SMTL ID : 1zgs.1
Parkia platycephala seed lectin in complex with 5-bromo-4-chloro-3-indolyl-a-D-mannose
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
6 x
XMM
:
5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside
(Non-covalent)
XMM.1:
8 residues within 4Å:
Chain A:
G.310
,
G.311
,
D.386
,
F.388
,
G.431
,
D.432
,
Y.433
,
D.435
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:D.386
,
A:F.388
Hydrogen bonds:
A:G.311
,
A:G.431
,
A:D.432
,
A:Y.433
,
A:Y.433
Water bridges:
A:G.311
,
A:D.312
,
A:D.432
,
A:D.432
,
A:D.435
,
A:D.435
XMM.2:
9 residues within 4Å:
Chain A:
A.163
,
G.164
,
D.165
,
F.239
,
S.281
,
G.282
,
Y.283
,
Y.284
,
D.286
9
PLIP interactions
:
9 interactions with chain A
Hydrogen bonds:
A:G.164
,
A:D.165
,
A:D.165
,
A:D.165
,
A:Y.283
,
A:Y.284
pi-Stacking:
A:Y.283
,
A:Y.283
Halogen bonds:
A:D.165
XMM.3:
8 residues within 4Å:
Chain A:
G.15
,
G.16
,
R.60
,
V.92
,
G.136
,
Y.137
,
Y.138
,
D.140
7
PLIP interactions
:
7 interactions with chain A
Hydrophobic interactions:
A:Y.137
Hydrogen bonds:
A:G.16
,
A:G.136
,
A:Y.137
,
A:Y.138
,
A:Y.138
pi-Stacking:
A:Y.137
XMM.4:
8 residues within 4Å:
Chain B:
G.15
,
G.16
,
R.60
,
V.92
,
G.136
,
Y.137
,
Y.138
,
D.140
7
PLIP interactions
:
7 interactions with chain B
Hydrophobic interactions:
B:Y.137
Hydrogen bonds:
B:G.16
,
B:G.136
,
B:Y.137
,
B:Y.138
,
B:Y.138
pi-Stacking:
B:Y.137
XMM.5:
9 residues within 4Å:
Chain B:
A.163
,
G.164
,
D.165
,
F.239
,
S.281
,
G.282
,
Y.283
,
Y.284
,
D.286
13
PLIP interactions
:
13 interactions with chain B
Hydrogen bonds:
B:G.164
,
B:D.165
,
B:D.165
,
B:D.165
,
B:G.282
,
B:Y.283
,
B:Y.284
,
B:Y.284
Water bridges:
B:A.163
,
B:A.163
pi-Stacking:
B:Y.283
,
B:Y.283
Halogen bonds:
B:D.165
XMM.6:
8 residues within 4Å:
Chain B:
G.310
,
G.311
,
D.386
,
F.388
,
G.431
,
D.432
,
Y.433
,
D.435
12
PLIP interactions
:
12 interactions with chain B
Hydrophobic interactions:
B:D.386
,
B:F.388
Hydrogen bonds:
B:G.311
,
B:G.431
,
B:D.432
,
B:Y.433
,
B:Y.433
Water bridges:
B:G.310
,
B:D.312
,
B:D.432
,
B:D.432
,
B:D.435
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gallego Del Sol, F. et al., The first crystal structure of a mimosoideae lectin reveals a novel quaternary arrangement of a widespread domain. J.Mol.Biol. (2005)
Release Date
2005-10-11
Peptides
Mannose/glucose-specific lectin:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Mannose/glucose-specific lectin
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