SMTL ID : 1zhq.2 (3 other biounits)

Crystal structure of apo MVL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: H.29, L.52, S.87, Y.88 Chain B: P.8 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.87 Water bridges: A:H.29, A:H.29, A:Y.88, B:Y.88 EDO.3: 5 residues within 4Å: Chain A: P.8 Chain B: H.29, L.52, S.87, Y.88 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.29, B:S.87 Water bridges: B:A.28, B:H.29, B:Y.88, B:Y.88

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain B: E.91, K.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.91, B:E.91 Salt bridges: B:K.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, D.C. et al., Crystal Structures of the HIV-1 Inhibitory Cyanobacterial Protein MVL Free and Bound to Man3GlcNAc2: STRUCTURAL BASIS FOR SPECIFICITY AND HIGH-AFFINITY BINDING TO THE CORE PENTASACCHARIDE FROM N-LINKED OLIGOMANNOSIDE. J.Biol.Chem. (2005)

Release Date

2005-06-07

Peptides

mannan-binding lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

mannan-binding lectin

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