SMTL ID : 1ziw.1

Human Toll-like Receptor 3 extracellular domain structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: K.174, F.201, N.226, M.252, Y.276, F.278 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.221, T.222, W.247, N.249 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain A: S.361, N.387, T.389, K.390, V.409, D.411 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: P.454, S.455, N.481, K.505 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: T.52, P.73, M.74, K.76, N.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.74, A:N.98 NAG.6: 3 residues within 4Å: Chain A: N.239, T.240, W.270 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.270 Water bridges: A:N.239 NAG.7: 4 residues within 4Å: Chain A: N.265, F.288, S.289, H.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.289 NAG.8: 2 residues within 4Å: Chain A: N.372, E.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.372, A:E.373 Water bridges: A:N.372

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 5 residues within 4Å: Chain A: Y.300, N.302, H.333, N.335, Y.357 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.335, A:Y.357 Salt bridges: A:H.333 SO4.10: 4 residues within 4Å: Chain A: R.462, N.489, Q.512, H.513 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.489, A:N.489, A:Q.512 Water bridges: A:N.542 Salt bridges: A:R.462, A:H.513

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.12: 6 residues within 4Å: Chain A: S.180, N.181, Q.182, N.204, V.205, Q.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.181, A:K.184, A:Q.206 GOL.13: 2 residues within 4Å: Chain A: D.497, E.501 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.497, A:E.501 Water bridges: A:D.498, A:D.498 GOL.14: 3 residues within 4Å: Chain A: S.162, E.163, D.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.166, A:D.166 GOL.15: 6 residues within 4Å: Chain A: M.460, I.484, D.486, I.508, D.510, Q.512 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.486, A:Q.512 GOL.16: 2 residues within 4Å: Chain A: D.340, N.362 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.362 Water bridges: A:R.305, A:K.309, A:Q.310, A:D.340, A:N.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J. et al., Crystal structure of human toll-like receptor 3 (TLR3) ectodomain. Science (2005)

Release Date

2005-06-28

Peptides

Toll-like receptor 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toll-like receptor 3