SMTL ID : 1zj6.2 (2 other biounits)

Crystal structure of human ARL5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.94, D.95, R.96, E.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.95, A:R.96, A:E.97, A:E.97 SO4.2: 10 residues within 4Å: Chain A: E.163, G.164, C.166, Q.167 Chain B: E.163, G.164, L.165, C.166, Q.167 Ligands: SO4.5 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.164, A:C.166, A:Q.167, B:G.164, B:C.166, B:Q.167 Water bridges: A:L.165, A:L.165, B:Q.155, B:L.165, B:L.165 SO4.4: 4 residues within 4Å: Chain B: T.94, D.95, R.96, E.97 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.95, B:D.95, B:R.96, B:E.97 SO4.5: 10 residues within 4Å: Chain A: E.163, G.164, L.165, C.166, Q.167 Chain B: E.163, G.164, C.166, Q.167 Ligands: SO4.2 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.164, A:C.166, A:Q.167, B:G.164, B:C.166, B:Q.167 Water bridges: A:Q.155, A:L.165, A:L.165, B:L.165, B:L.165

2 x G3D: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE(Non-covalent)

G3D.3: 15 residues within 4Å: Chain A: L.24, D.25, N.26, A.27, G.28, K.29, T.30, T.31, N.125, K.126, D.128, V.129, C.158, A.159, L.160 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.25, A:N.26, A:A.27, A:G.28, A:K.29, A:T.30, A:T.30, A:T.31, A:N.125, A:K.126, A:K.126, A:A.159, A:L.160 Water bridges: A:D.25, A:T.30, A:D.66, A:D.66 Salt bridges: A:K.29, A:D.128 G3D.6: 15 residues within 4Å: Chain B: L.24, D.25, N.26, A.27, G.28, K.29, T.30, T.31, N.125, K.126, D.128, V.129, C.158, A.159, L.160 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:N.26, B:A.27, B:G.28, B:K.29, B:T.30, B:T.31, B:T.31, B:N.125, B:K.126, B:K.126, B:A.159, B:L.160 Water bridges: B:D.25, B:T.30, B:D.66, B:D.66 Salt bridges: B:K.29, B:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z.X. et al., 2.0A crystal structure of human ARL5-GDP3'P, a novel member of the small GTP-binding proteins. Biochem.Biophys.Res.Commun. (2005)

Release Date

2005-06-07

Peptides

ADP-ribosylation factor-like protein 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADP-ribosylation factor-like protein 5

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