SMTL ID : 1zjy.1

Structure of R-specific alcohol dehydrogenase (mutant G37D) from Lactobacillus brevis in complex with phenylethanol and NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: Q.251 Chain D: Q.251 Ligands: MG.10 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.251, A:Q.251, H2O.12, H2O.14, H2O.55, H2O.57 MG.4: 3 residues within 4Å: Chain B: Q.251 Chain C: Q.251 Ligands: MG.7 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.251, B:Q.251, H2O.26, H2O.29, H2O.40, H2O.43 MG.7: 3 residues within 4Å: Chain B: Q.251 Chain C: Q.251 Ligands: MG.4 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.251, B:Q.251, H2O.26, H2O.29, H2O.40, H2O.43 MG.10: 3 residues within 4Å: Chain A: Q.251 Chain D: Q.251 Ligands: MG.1 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.251, A:Q.251, H2O.12, H2O.14, H2O.55, H2O.57

4 x SS2: (1R)-1-PHENYLETHANOL(Non-covalent)

SS2.2: 6 residues within 4Å: Chain A: A.93, N.95, L.152, Y.155, Y.189 Ligands: NAI.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.93, A:L.152, A:L.152 SS2.5: 6 residues within 4Å: Chain B: A.93, N.95, L.152, Y.155, Y.189 Ligands: NAI.6 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.93, B:L.152, B:L.152 SS2.8: 6 residues within 4Å: Chain C: A.93, N.95, L.152, Y.155, Y.189 Ligands: NAI.9 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.93, C:L.152, C:L.152 SS2.11: 6 residues within 4Å: Chain D: A.93, N.95, L.152, Y.155, Y.189 Ligands: NAI.12 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:A.93, D:L.152, D:L.152

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.3: 26 residues within 4Å: Chain A: G.13, L.16, G.17, I.18, G.19, D.37, R.38, H.61, D.62, S.63, N.89, A.90, G.91, I.92, V.112, M.140, S.142, Y.155, K.159, P.187, G.188, Y.189, I.190, T.192, L.194 Ligands: SS2.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:L.16, A:L.16, A:I.18, A:G.19, A:D.37, A:R.38, A:D.62, A:S.63, A:N.89, A:G.91, A:K.159, A:I.190, A:I.190 Water bridges: A:Y.155, A:Y.155, A:T.192, A:L.194 NAI.6: 26 residues within 4Å: Chain B: G.13, L.16, G.17, I.18, G.19, D.37, R.38, H.61, D.62, S.63, N.89, A.90, G.91, I.92, V.112, M.140, S.142, Y.155, K.159, P.187, G.188, Y.189, I.190, T.192, L.194 Ligands: SS2.5 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:L.16, B:L.16, B:I.18, B:G.19, B:D.37, B:R.38, B:D.62, B:S.63, B:N.89, B:G.91, B:K.159, B:I.190, B:I.190 Water bridges: B:Y.155, B:Y.155, B:T.192, B:L.194 NAI.9: 26 residues within 4Å: Chain C: G.13, L.16, G.17, I.18, G.19, D.37, R.38, H.61, D.62, S.63, N.89, A.90, G.91, I.92, V.112, M.140, S.142, Y.155, K.159, P.187, G.188, Y.189, I.190, T.192, L.194 Ligands: SS2.8 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:L.16, C:L.16, C:I.18, C:G.19, C:D.37, C:D.37, C:R.38, C:D.62, C:S.63, C:N.89, C:G.91, C:Y.155, C:K.159, C:I.190, C:I.190 Water bridges: C:T.192, C:T.192, C:T.192, C:L.194 NAI.12: 26 residues within 4Å: Chain D: G.13, L.16, G.17, I.18, G.19, D.37, R.38, H.61, D.62, S.63, N.89, A.90, G.91, I.92, V.112, M.140, S.142, Y.155, K.159, P.187, G.188, Y.189, I.190, T.192, L.194 Ligands: SS2.11 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:L.16, D:L.16, D:I.18, D:G.19, D:D.37, D:D.37, D:R.38, D:D.62, D:S.63, D:N.89, D:G.91, D:Y.155, D:K.159, D:I.190, D:I.190 Water bridges: D:T.192, D:T.192, D:T.192, D:L.194

Links

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Citation

Schlieben, N.H. et al., Atomic Resolution Structures of R-specific Alcohol Dehydrogenase from Lactobacillus brevis Provide the Structural Bases of its Substrate and Cosubstrate Specificity. J.Mol.Biol. (2005)

Release Date

2005-06-21

Peptides

R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

R-specific alcohol dehydrogenase

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