SMTL ID : 1zkk.1

Crystal structure of hSET8 in ternary complex with H4 peptide (16-24) and AdoHcy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

hetero-4-4-mer

Ligands

4 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 15 residues within 4Å: Chain A: G.40, K.41, G.42, R.43, C.85, Y.86, R.110, L.111, I.112, N.113, H.114, Y.151, W.164 Chain E: H.4, K.6 16 PLIP interactions: 13 interactions with chain A, 2 interactions with chain G, 1 interactions with chain E Hydrogen bonds: A:R.43, A:R.43, A:R.43, A:Y.86, A:N.113, A:H.114, A:H.114, E:H.4 Water bridges: A:K.41, A:C.85, G:D.10 Salt bridges: A:R.43, G:R.9 pi-Stacking: A:W.164, A:W.164, A:W.164 SAH.2: 15 residues within 4Å: Chain B: G.40, K.41, G.42, R.43, C.85, Y.86, R.110, L.111, I.112, N.113, H.114, Y.151, W.164 Chain F: H.4, K.6 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:R.43, B:R.43, B:R.43, B:N.113, B:H.114, B:H.114, F:H.4 Water bridges: B:K.41, B:C.85 Salt bridges: B:R.43 pi-Stacking: B:W.164, B:W.164, B:W.164 SAH.3: 15 residues within 4Å: Chain C: G.40, K.41, G.42, R.43, C.85, Y.86, R.110, L.111, I.112, N.113, H.114, Y.151, W.164 Chain G: H.4, K.6 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain G Hydrogen bonds: C:R.43, C:R.43, C:R.43, C:N.113, C:H.114, C:H.114, G:H.4 Water bridges: C:K.41, C:C.85 Salt bridges: C:R.43 pi-Stacking: C:W.164, C:W.164, C:W.164 SAH.4: 15 residues within 4Å: Chain D: G.40, K.41, G.42, R.43, C.85, Y.86, R.110, L.111, I.112, N.113, H.114, Y.151, W.164 Chain H: H.4, K.6 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain H Hydrogen bonds: D:R.43, D:R.43, D:R.43, D:Y.86, D:N.113, D:H.114, D:H.114, H:H.4 Water bridges: D:K.41 Salt bridges: D:R.43 pi-Stacking: D:W.164, D:W.164, D:W.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Couture, J.-F. et al., Structural and functional analysis of SET8, a histone H4 Lys-20 methyltransferase. Genes Dev. (2005)

Release Date

2005-06-07

Peptides

Histone-lysine N-methyltransferase, H4 lysine-20 specific: ABCD
Peptide corresponding to residues 15-24 of histone H4: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Histone-lysine N-methyltransferase, H4 lysine-20 specific

Peptide corresponding to residues 15-24 of histone H4

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