SMTL ID : 1zku.1

Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 15.00 Å

Oligo State

homo-18-mer

Ligands

18 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 7 residues within 4Å: Chain A: I.231, S.232, S.233, E.234 Chain B: V.237, M.238, R.239 Ligand excluded by PLIP EPE.2: 7 residues within 4Å: Chain B: I.231, S.232, S.233, E.234 Chain C: V.237, M.238, R.239 Ligand excluded by PLIP EPE.3: 7 residues within 4Å: Chain A: V.237, M.238, R.239 Chain C: I.231, S.232, S.233, E.234 Ligand excluded by PLIP EPE.4: 7 residues within 4Å: Chain D: I.231, S.232, S.233, E.234 Chain E: V.237, M.238, R.239 Ligand excluded by PLIP EPE.5: 7 residues within 4Å: Chain E: I.231, S.232, S.233, E.234 Chain F: V.237, M.238, R.239 Ligand excluded by PLIP EPE.6: 7 residues within 4Å: Chain D: V.237, M.238, R.239 Chain F: I.231, S.232, S.233, E.234 Ligand excluded by PLIP EPE.7: 7 residues within 4Å: Chain G: I.231, S.232, S.233, E.234 Chain H: V.237, M.238, R.239 Ligand excluded by PLIP EPE.8: 7 residues within 4Å: Chain H: I.231, S.232, S.233, E.234 Chain I: V.237, M.238, R.239 Ligand excluded by PLIP EPE.9: 7 residues within 4Å: Chain G: V.237, M.238, R.239 Chain I: I.231, S.232, S.233, E.234 Ligand excluded by PLIP EPE.10: 7 residues within 4Å: Chain J: I.231, S.232, S.233, E.234 Chain K: V.237, M.238, R.239 Ligand excluded by PLIP EPE.11: 7 residues within 4Å: Chain K: I.231, S.232, S.233, E.234 Chain L: V.237, M.238, R.239 Ligand excluded by PLIP EPE.12: 7 residues within 4Å: Chain J: V.237, M.238, R.239 Chain L: I.231, S.232, S.233, E.234 Ligand excluded by PLIP EPE.13: 7 residues within 4Å: Chain M: I.231, S.232, S.233, E.234 Chain N: V.237, M.238, R.239 Ligand excluded by PLIP EPE.14: 7 residues within 4Å: Chain N: I.231, S.232, S.233, E.234 Chain O: V.237, M.238, R.239 Ligand excluded by PLIP EPE.15: 7 residues within 4Å: Chain M: V.237, M.238, R.239 Chain O: I.231, S.232, S.233, E.234 Ligand excluded by PLIP EPE.16: 7 residues within 4Å: Chain P: I.231, S.232, S.233, E.234 Chain Q: V.237, M.238, R.239 Ligand excluded by PLIP EPE.17: 7 residues within 4Å: Chain Q: I.231, S.232, S.233, E.234 Chain R: V.237, M.238, R.239 Ligand excluded by PLIP EPE.18: 7 residues within 4Å: Chain P: V.237, M.238, R.239 Chain R: I.231, S.232, S.233, E.234 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kostyuchenko, V.A. et al., The tail structure of bacteriophage T4 and its mechanism of contraction. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-08-09

Peptides

Baseplate structural protein Gp9: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

Baseplate structural protein Gp9

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