SMTL ID : 1zlp.1

Petal death protein PSR132 with cysteine-linked glutaraldehyde forming a thiohemiacetal adduct

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.79, D.107, D.109, E.136, K.142 Ligands: GAQ.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.107 MG.3: 5 residues within 4Å: Chain B: D.79, D.107, D.109, K.142 Ligands: GAQ.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.107 MG.5: 6 residues within 4Å: Chain C: D.79, D.107, D.109, E.136, K.142 Ligands: GAQ.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.107 MG.7: 5 residues within 4Å: Chain D: D.79, D.107, D.109, K.142 Ligands: GAQ.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.107

4 x GAQ: 5-HYDROXYPENTANAL(Covalent)

GAQ.2: 11 residues within 4Å: Chain A: Y.68, D.107, C.144, G.145, R.179, E.209, N.231, I.233, S.257, L.258 Ligands: MG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.179 GAQ.4: 11 residues within 4Å: Chain B: Y.68, D.107, C.144, G.145, H.146, R.179, E.209, N.231, I.233, L.258 Ligands: MG.3 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.233 Hydrogen bonds: B:R.179 GAQ.6: 11 residues within 4Å: Chain C: Y.68, D.107, C.144, G.145, R.179, E.209, N.231, I.233, S.257, L.258 Ligands: MG.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.179 GAQ.8: 11 residues within 4Å: Chain D: Y.68, D.107, C.144, G.145, H.146, R.179, E.209, N.231, I.233, L.258 Ligands: MG.7 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.233 Hydrogen bonds: D:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplyakov, A. et al., Crystal Structure of the Petal Death Protein from Carnation Flower. Biochemistry (2005)

Release Date

2006-01-03

Peptides

petal death protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

petal death protein