SMTL ID : 1zlr.1

Factor XI catalytic domain complexed with 2-guanidino-1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)ethyl nicotinate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.37, Q.77, K.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.77 Salt bridges: A:K.98 SO4.2: 3 residues within 4Å: Chain A: Y.134, R.138, K.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.134, A:Y.134 Salt bridges: A:R.138, A:K.185 SO4.3: 4 residues within 4Å: Chain A: H.82, K.170, Y.227, W.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.84 Water bridges: A:K.170, A:W.230, A:W.230 Salt bridges: A:H.82, A:K.170

1 x 368: (1R)-2-{[AMINO(IMINO)METHYL]AMINO}-1-{4-[(4R)-4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL]PHENYL}ETHYL NICOTINATE(Covalent)

368.4: 16 residues within 4Å: Chain A: L.28, C.29, H.44, L.137, D.182, A.183, C.184, K.185, G.186, D.187, S.188, W.208, G.209, G.211, C.212, G.219 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.44, A:A.183, A:K.185, A:G.186, A:S.188, A:G.211 Water bridges: A:W.208 Salt bridges: A:D.182

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: V.8, R.9, G.10, E.11, W.12, P.13, G.60, I.61, L.62, S.108, L.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:S.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarova, T.I. et al., Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-05-09

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI