SMTL ID : 1zmp.2 (6 other biounits)

Crystal structure of human defensin-5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.9, C.10, L.16, R.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.10, A:L.16 Salt bridges: A:R.28 SO4.2: 4 residues within 4Å: Chain A: R.6, T.7, G.8 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.6, A:T.7, A:T.7, A:G.8

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: L.26, Y.27, R.28 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.26 GOL.4: 4 residues within 4Å: Chain A: Y.4, C.5, I.22 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.5 Water bridges: A:C.3 GOL.5: 5 residues within 4Å: Chain A: C.5, I.22, Y.27 Ligands: SO4.2, GOL.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szyk, A. et al., Crystal structures of human {alpha}-defensins HNP4, HD5, and HD6. Protein Sci. (2006)

Release Date

2006-05-30

Peptides

Defensin 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Defensin 5

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