SMTL ID : 1znq.1

Crystal Structure of Human Liver GAPDH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: N.12, G.13, F.14, G.15, R.16, I.17, N.37, D.38, P.39, F.40, I.41, E.82, R.83, S.101, T.102, G.103, F.105, S.125, A.126, C.155, A.186, N.319, E.320, Y.323 Chain C: P.194 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.17, A:Y.323 Hydrogen bonds: A:N.12, A:F.14, A:R.16, A:I.17, A:N.37, A:R.83, A:N.319 Water bridges: A:G.15, A:G.18 NAD.2: 24 residues within 4Å: Chain B: N.12, G.13, F.14, G.15, R.16, I.17, N.37, D.38, P.39, F.40, I.41, E.82, R.83, S.101, T.102, G.103, F.105, S.125, A.126, C.155, A.186, N.319, E.320, Y.323 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.17, B:Y.323 Hydrogen bonds: B:N.12, B:F.14, B:R.16, B:I.17, B:R.83, B:N.319 Water bridges: B:G.15, B:G.18 NAD.3: 24 residues within 4Å: Chain C: N.12, G.13, F.14, G.15, R.16, I.17, N.37, D.38, P.39, F.40, I.41, E.82, R.83, S.101, T.102, G.103, F.105, S.125, A.126, C.155, A.186, N.319, E.320, Y.323 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.17, C:Y.323 Hydrogen bonds: C:F.14, C:R.16, C:I.17, C:R.83, C:N.319 Water bridges: C:G.15, C:G.18 pi-Stacking: C:F.40 NAD.4: 25 residues within 4Å: Chain B: P.194 Chain D: N.12, G.13, F.14, G.15, R.16, I.17, N.37, D.38, P.39, F.40, I.41, E.82, R.83, S.101, T.102, G.103, F.105, S.125, A.126, C.155, A.186, N.319, E.320, Y.323 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.17, D:Y.323 Hydrogen bonds: D:N.12, D:F.14, D:R.16, D:I.17, D:N.37, D:R.83, D:N.319 pi-Stacking: D:F.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ismail, S.A. et al., Crystal Structure Analysis of Human liver GAPDH. To be Published

Release Date

2005-05-24

Peptides

Glyceraldehyde-3-phosphate dehydrogenase, liver: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
R

D
Q

Glyceraldehyde-3-phosphate dehydrogenase, liver