SMTL ID : 1zpa.1

HIV Protease with Scripps AB-3 Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x A83: TERT-BUTYL 4-[({[1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL}AMINO)CARBONYL]BENZYLCARBAMATE(Non-covalent)

A83.1: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, G.48, G.49, I.50, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: A83.2 19 PLIP interactions: 9 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:A.28, B:D.30, B:P.81, B:V.82, B:I.84, A:I.50, A:I.84 Hydrogen bonds: B:R.8, B:D.30, B:D.30, A:D.29 Salt bridges: B:D.25, A:D.25 Water bridges: A:D.29, A:D.29, A:I.50, A:I.50, A:I.50, A:I.50 A83.2: 22 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, G.48, G.49, I.50, V.82, I.84 Ligands: A83.1 17 PLIP interactions: 8 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:A.28, A:D.30, A:P.81, A:V.82, A:I.84, B:I.50, B:I.84 Hydrogen bonds: A:R.8, A:D.30, B:D.29 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.29, B:I.50, B:I.50, B:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brik, A. et al., 1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors. Chembiochem (2005)

Release Date

2005-05-31

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pol polyprotein

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