SMTL ID : 1zq1.1

Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-oligomer

Ligands

2 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 8 residues within 4Å: Chain A: F.145, S.146, E.147, G.177, T.178, D.179, A.204 Chain B: Y.376 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.146, A:E.147, A:T.178, A:T.178, A:D.179, B:Y.376, B:Y.376 Salt bridges: A:K.256 Hydrophobic interactions: B:Y.376 ASP.2: 9 residues within 4Å: Chain A: Y.376 Chain B: F.145, S.146, E.147, G.177, T.178, D.179, A.204, Q.205 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.146, B:T.178, B:T.178, B:D.179, B:D.179, A:H.341, A:Y.376 Water bridges: B:A.204 Hydrophobic interactions: A:Y.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, E. et al., Structural Basis for tRNA-Dependent Amidotransferase Function. Structure (2005)

Release Date

2005-10-18

Peptides

Glutamyl-tRNA(Gln) amidotransferase subunit D: AB
Glutamyl-tRNA(Gln) amidotransferase subunit E: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glutamyl-tRNA(Gln) amidotransferase subunit D

Glutamyl-tRNA(Gln) amidotransferase subunit E