SMTL ID : 1zvq.1

Structure of the Q61G mutant of Ras in the GDP-bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: S.17 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.17, H2O.1, H2O.1, H2O.2, H2O.2 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 20 residues within 4Å: Chain A: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, Y.32, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:A.18, A:V.29, A:N.116, A:K.117, A:K.117, A:A.146, A:K.147 Water bridges: A:K.16, A:S.17, A:S.17, A:S.17, A:S.17, A:Y.32, A:P.34, A:T.58 Salt bridges: A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ford, B. et al., Structure of a transient intermediate for GTP hydrolysis by ras. Structure (2006)

Release Date

2006-03-14

Peptides

Transforming protein p21/H-Ras-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transforming protein p21/H-Ras-1

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