SMTL ID : 1zvx.1

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (R-enantiomer)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.58, G.90, I.91, G.92, D.94 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.58, A:G.90, A:G.92, A:D.94, H2O.3, H2O.4 CA.2: 6 residues within 4Å: Chain A: D.75, G.76, N.78, I.80, D.98, E.101 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.75, A:G.76, A:N.78, A:I.80, A:D.98, A:E.101

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: H.68, D.70, S.72, H.83, H.96 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.68, A:D.70, A:H.83 ZN.4: 4 residues within 4Å: Chain A: H.118, H.122, H.128 Ligands: FIN.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.118, A:H.122, A:H.128

1 x FIN: (1R)-1-{[(4'-METHOXY-1,1'-BIPHENYL-4-YL)SULFONYL]AMINO}-2-METHYLPROPYLPHOSPHONIC ACID(Non-covalent)

FIN.5: 19 residues within 4Å: Chain A: I.80, L.81, A.82, H.83, L.114, V.115, H.118, E.119, H.122, H.128, L.135, Y.137, P.138, N.139, Y.140, A.141, R.143, Y.148 Ligands: ZN.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.80, A:H.83, A:V.115, A:H.118, A:L.135, A:Y.140, A:Y.140 Hydrogen bonds: A:A.82, A:E.119 Water bridges: A:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pochetti, G. et al., Structural insight into the stereoselective inhibition of MMP-8 by enantiomeric sulfonamide phosphonates. J.Med.Chem. (2006)

Release Date

2006-05-16

Peptides

Neutrophil collagenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neutrophil collagenase

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