SMTL ID : 1zy9.1

Crystal structure of Alpha-galactosidase (EC 3.2.1.22) (Melibiase) (tm1192) from Thermotoga maritima at 2.34 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: I.15, K.18, T.19, F.20, R.21, F.25, F.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.21, A:R.21 Water bridges: A:F.16 EDO.2: 7 residues within 4Å: Chain A: W.77, P.398, D.399, G.412, A.413, P.414 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.399 EDO.3: 6 residues within 4Å: Chain A: W.77, W.97, N.411, G.412, A.413 Ligands: EDO.2 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: D.233, N.302, W.303, F.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.302, A:W.303 Water bridges: A:N.302

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: W.202, Y.203, D.232, W.269, K.337, D.339, R.395, D.399 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.269, A:K.337, A:D.339, A:R.395, A:D.399 Water bridges: A:D.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase) (tm1192) from Thermotoga maritima at 2.34 A resolution. to be published

Release Date

2005-07-12

Peptides

alpha-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-galactosidase