SMTL ID : 1zyb.1

Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: T.76, N.77, A.108 Chain B: Y.153, W.157 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.77 Water bridges: B:S.154 GOL.2: 7 residues within 4Å: Chain A: I.46, H.48, I.54, I.55, Q.63, T.119, C.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.48, A:Q.63, A:T.119 Water bridges: A:Y.107, A:Y.107 GOL.3: 5 residues within 4Å: Chain A: H.9, H.10, M.13, E.14, F.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.10, A:E.14 Water bridges: A:H.9 GOL.4: 1 residues within 4Å: Chain A: K.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.5 GOL.5: 6 residues within 4Å: Chain A: V.187, M.189, L.218, H.219, K.221, E.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.219 GOL.6: 2 residues within 4Å: Chain A: L.218, H.219 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.219 Water bridges: A:Q.211, A:Q.211, A:L.218, A:L.218 GOL.7: 7 residues within 4Å: Chain A: R.148, L.152, R.155, S.174, C.176, E.177 Chain B: Y.153 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.155, A:R.155, A:S.174, A:E.177 Water bridges: A:R.148, A:R.148, A:R.148 GOL.8: 5 residues within 4Å: Chain A: Y.153, W.157 Chain B: T.76, N.77, A.108 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:S.154 Hydrogen bonds: B:N.77 GOL.9: 7 residues within 4Å: Chain B: I.46, H.48, I.54, I.55, Q.63, T.119, C.121 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.48, B:Q.63 Water bridges: B:Y.107 GOL.10: 5 residues within 4Å: Chain B: H.9, H.10, M.13, E.14, F.17 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.14, B:E.14, B:E.14 Water bridges: B:H.9 GOL.11: 1 residues within 4Å: Chain B: K.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.5 GOL.12: 6 residues within 4Å: Chain B: V.187, M.189, L.218, H.219, K.221, E.222 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.219 GOL.13: 2 residues within 4Å: Chain B: L.218, H.219 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Q.211, B:Q.211, B:L.218, B:L.218 GOL.14: 7 residues within 4Å: Chain A: Y.153 Chain B: R.148, L.152, R.155, S.174, C.176, E.177 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.155, B:R.155, B:S.174, B:E.177, B:E.177 Water bridges: B:R.148, B:R.148, B:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution. To be published

Release Date

2005-07-19

Peptides

transcription regulator, CRP family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

transcription regulator, CRP family