SMTL ID : 1zzm.1

Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.9, H.11, E.97, H.157, D.207 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.9, A:H.11, A:E.97, A:D.207, H2O.11 ZN.2: 5 residues within 4Å: Chain A: H.66, E.97, H.133, H.157 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.97, A:H.133, A:H.157, H2O.11, H2O.12 ZN.3: 3 residues within 4Å: Chain A: D.117, H.144, H.148 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.117, A:D.117, A:H.144, A:H.148 ZN.4: 1 residues within 4Å: Chain A: M.1 No protein-ligand interaction detected (PLIP)

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.5: 16 residues within 4Å: Chain A: H.11, F.14, T.41, H.66, P.67, G.68, M.69, L.70, D.101, F.103, D.106, P.107, Q.108, Q.112, P.209, D.210 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.106, A:R.135, A:R.135, A:D.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of YJJV, TATD homolog from Escherichia coli K12, at 1.8 A resolution. To be Published

Release Date

2005-06-28

Peptides

putative deoxyribonuclease yjjV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative deoxyribonuclease yjjV