- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.12, Y.14, N.16, D.21
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.12, A:D.12, A:Y.14, A:D.21, H2O.3
CA.10: 4 residues within 4Å:- Chain B: D.12, Y.14, N.16, D.21
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.12, B:D.12, B:Y.14, B:D.21, H2O.6
CA.18: 4 residues within 4Å:- Chain C: D.12, Y.14, N.16, D.21
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.12, C:D.12, C:Y.14, C:D.21, H2O.9
CA.26: 4 residues within 4Å:- Chain D: D.12, Y.14, N.16, D.21
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.12, D:D.12, D:Y.14, D:D.21, H2O.12
- 4 x CD: CADMIUM ION(Non-covalent)
CD.4: 2 residues within 4Å:- Chain A: E.89, E.185
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.89, A:E.185
CD.12: 2 residues within 4Å:- Chain B: E.89, E.185
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.89, B:E.185
CD.20: 2 residues within 4Å:- Chain C: E.89, E.185
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.89, C:E.185
CD.28: 2 residues within 4Å:- Chain D: E.89, E.185
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.89, D:E.185
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
XMM.8: 9 residues within 4Å:- Chain A: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.101
- Hydrogen bonds: A:Y.14, A:N.16, A:G.100, A:L.101, A:Y.102, A:Y.102, A:R.230
- Water bridges: A:R.230
XMM.16: 9 residues within 4Å:- Chain B: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:L.101
- Hydrogen bonds: B:Y.14, B:Y.14, B:N.16, B:G.100, B:L.101, B:Y.102, B:Y.102, B:R.230
- Water bridges: B:R.230
XMM.24: 9 residues within 4Å:- Chain C: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:L.101
- Hydrogen bonds: C:Y.14, C:N.16, C:G.100, C:L.101, C:Y.102, C:Y.102, C:R.230
- Water bridges: C:R.230
XMM.32: 9 residues within 4Å:- Chain D: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.101
- Hydrogen bonds: D:Y.14, D:Y.14, D:N.16, D:G.100, D:L.101, D:Y.102, D:Y.102, D:R.230
- Water bridges: D:R.230
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagano, C.S. et al., Insights Into the Structural Basis of the Ph-Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins. Biochem.J. (2008)
- Release Date
- 2007-10-30
- Peptides
- LECTIN ALPHA CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x CD: CADMIUM ION(Non-covalent)
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagano, C.S. et al., Insights Into the Structural Basis of the Ph-Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins. Biochem.J. (2008)
- Release Date
- 2007-10-30
- Peptides
- LECTIN ALPHA CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A