SMTL ID : 2p3i.1

Crystal structure of Rhesus Rotavirus VP8* at 295K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.71, Q.72, T.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.71, A:Q.72, A:T.73

1 x MNA: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid(Non-covalent)

MNA.2: 8 residues within 4Å: Chain A: R.38, V.81, T.83, Y.92, K.124, Y.125, Y.126, S.127 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.124, A:Y.125, A:Y.126 Hydrogen bonds: A:R.38, A:R.38, A:Y.125, A:S.127 Water bridges: A:Y.92, A:Y.92, A:Y.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kraschnefski, M.J. et al., Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein. Glycobiology (2009)

Release Date

2008-03-11

Peptides

VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP4

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