SMTL ID : 2a0i.1

F Factor TraI Relaxase Domain bound to F oriT Single-stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: T.8, G.9 Chain B: H.146, H.157, H.159 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.146, B:H.157, B:H.159

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 6 residues within 4Å: Chain B: R.198, R.201, E.202, H.221, G.222, W.224 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.201, B:E.202 pi-Cation interactions: B:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larkin, C. et al., Inter- and intramolecular determinants of the specificity of single-stranded DNA binding and cleavage by the f factor relaxase. Structure (2005)

Release Date

2005-10-25

Peptides

TraI protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

TraI protein