SMTL ID : 2a2a.1 (1 other biounit)

High-resolution crystallographic analysis of the autoinhibited conformation of a human death-associated protein kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: N.191 Chain B: N.191 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.191 NA.2: 2 residues within 4Å: Chain A: L.212, T.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.291 Water bridges: A:T.245 NA.7: 3 residues within 4Å: Chain B: V.57, S.58, E.61 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.58, B:S.58 NA.8: 3 residues within 4Å: Chain B: L.212, T.245, V.291 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.212

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.64, H.167, E.168 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.48, S.50, R.59 Ligand excluded by PLIP

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.5: 9 residues within 4Å: Chain A: I.178, F.179, G.180, P.182, V.185, K.223, L.227 Chain B: I.178 Ligands: DTT.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:I.178, A:K.223 DTT.9: 8 residues within 4Å: Chain A: I.178 Chain B: F.179, G.180, P.182, V.185, K.223, L.227 Ligands: DTT.5 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.223, B:K.223

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: A.41, I.78, L.94, E.95, L.96, V.97, M.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.95, A:V.97 Water bridges: A:V.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simon, B. et al., Death-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites. Structure (2016)

Release Date

2006-10-17

Peptides

Death-associated protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Death-associated protein kinase 2

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