- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x 8DA: 8-OXODEOXYADENOSINE(Non-covalent)
8DA.2: 10 residues within 4Å:- Chain A: L.14, Y.33, W.70, F.72, T.77, F.79, W.97, L.99, N.118
- Chain C: W.110
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.14, C:W.110
- Hydrogen bonds: A:N.12, A:T.77, A:T.77, A:N.118, A:N.118
- Water bridges: A:A.36
- pi-Stacking: A:W.70
8DA.4: 11 residues within 4Å:- Chain B: L.14, Y.33, T.35, A.36, W.70, F.72, T.77, F.79, W.97, N.118
- Chain D: W.110
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.14
- Hydrogen bonds: B:Y.33, B:T.35, B:A.36, B:N.118
- pi-Stacking: B:W.70, B:W.70
8DA.6: 10 residues within 4Å:- Chain A: W.110
- Chain C: L.14, Y.33, W.70, F.72, T.77, F.79, W.97, L.99, N.118
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:L.14, A:W.110
- Hydrogen bonds: C:N.12, C:T.77, C:T.77, C:N.118, C:N.118
- Water bridges: C:A.36
- pi-Stacking: C:W.70
8DA.8: 11 residues within 4Å:- Chain B: W.110
- Chain D: L.14, Y.33, T.35, A.36, W.70, F.72, T.77, F.79, W.97, N.118
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.14
- Hydrogen bonds: D:Y.33, D:T.35, D:A.36, D:N.118
- pi-Stacking: D:W.70, D:W.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Conners, R. et al., Recognition of oxidatively modified bases within the biotin-binding site of avidin. J.Mol.Biol. (2006)
- Release Date
- 2006-05-23
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x 8DA: 8-OXODEOXYADENOSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Conners, R. et al., Recognition of oxidatively modified bases within the biotin-binding site of avidin. J.Mol.Biol. (2006)
- Release Date
- 2006-05-23
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B