SMTL ID : 2a62.1

Crystal structure of mouse cadherin-8 EC1-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.50 Å

Oligo State

homo-dimer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.100, N.102, D.132, D.134, S.141, D.187 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.132, A:D.187 CA.2: 8 residues within 4Å: Chain A: E.11, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.66, A:D.98, A:I.99, A:D.101 CA.3: 6 residues within 4Å: Chain A: E.11, E.12, D.64, E.66, D.101 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.12, A:E.66, A:E.66, A:D.101 CA.4: 6 residues within 4Å: Chain A: N.209, N.211, D.241, D.243, N.247, N.298 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.211, A:D.241, A:D.241, A:N.247 CA.5: 6 residues within 4Å: Chain A: E.117, D.207, V.208, D.210, D.243 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.117, A:D.207, A:D.207, A:V.208, A:D.210 CA.6: 7 residues within 4Å: Chain A: E.117, R.173, E.174, D.207, D.210, D.243 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.117, A:E.174, A:D.207, A:D.210, A:D.243 CA.7: 6 residues within 4Å: Chain B: N.100, N.102, D.132, D.134, S.141, D.187 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.132, B:D.187 CA.8: 8 residues within 4Å: Chain B: E.11, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.66, B:D.98, B:I.99, B:D.101 CA.9: 6 residues within 4Å: Chain B: E.11, E.12, D.64, E.66, D.101 Ligands: CA.8 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.12, B:E.66, B:E.66, B:D.101 CA.10: 6 residues within 4Å: Chain B: N.209, N.211, D.241, D.243, N.247, N.298 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:N.211, B:D.241, B:D.241, B:N.247 CA.11: 6 residues within 4Å: Chain B: E.117, D.207, V.208, D.210, D.243 Ligands: CA.12 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.117, B:D.207, B:D.207, B:V.208, B:D.210 CA.12: 7 residues within 4Å: Chain B: E.117, R.173, E.174, D.207, D.210, D.243 Ligands: CA.11 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.117, B:E.174, B:D.207, B:D.210, B:D.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, S.D. et al., Type II cadherin ectodomain structures: implications for classical cadherin specificity. Cell(Cambridge,Mass.) (2006)

Release Date

2006-04-25

Peptides

Cadherin-8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cadherin-8