SMTL ID : 2a74.1 (1 other biounit)

Human Complement Component C3c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NDG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG-NDG.1: 6 residues within 4Å: Chain A: T.19, N.63, L.478, L.479, K.480, A.481 No protein-ligand interaction detected (PLIP)

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.313, S.314, D.315, M.316 Chain B: R.86 Chain C: L.165 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:G.313 Hydrogen bonds: B:R.86, B:R.86 GOL.3: 5 residues within 4Å: Chain A: D.535, S.536, Q.591, S.592, W.595 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.595 GOL.4: 6 residues within 4Å: Chain A: S.536, C.537, G.539, S.540, L.541 Chain B: D.71 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:C.537, A:L.541, B:D.71 Water bridges: B:D.71 GOL.5: 9 residues within 4Å: Chain B: I.7, I.8, E.10, I.13, R.115, E.117, Q.135, K.165, A.167 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.8, B:R.115, B:R.115, B:E.117 Water bridges: B:R.133 GOL.6: 4 residues within 4Å: Chain B: E.10, I.13, E.163, K.165 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.13, B:K.165, B:K.165 GOL.8: 7 residues within 4Å: Chain C: F.199, I.200, K.202, T.306, W.307, V.308, E.309 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.200, C:T.306, C:V.308 GOL.9: 7 residues within 4Å: Chain C: F.199, A.273, L.274, K.275, Y.282, V.308, H.310 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.310

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.7: 4 residues within 4Å: Chain C: L.185, F.238, E.240, I.265 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.238, C:E.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Janssen, B.J. et al., Structures of complement component C3 provide insights into the function and evolution of immunity. Nature (2005)

Release Date

2005-09-27

Peptides

Complement Component C3c: A
Complement Component C3c: B
Complement Component C3c: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Complement Component C3c

Complement Component C3c

Complement Component C3c

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