SMTL ID : 2a7m.1

1.6 Angstrom Resolution Structure of the Quorum-Quenching N-Acyl Homoserine Lactone Hydrolase of Bacillus thuringiensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.108, H.109, D.191, H.235 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:H.109, A:D.191, A:H.235, H2O.1 ZN.2: 7 residues within 4Å: Chain A: H.104, H.106, H.109, H.169, D.191 Ligands: ZN.1, GOL.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.104, A:H.106, A:H.169, A:D.191, H2O.1

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.89, V.90, F.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.89 Water bridges: A:P.10, A:E.80 GOL.4: 10 residues within 4Å: Chain A: L.16, I.73, H.106, F.107, D.108, H.169, Y.194, A.206 Ligands: ZN.2, GOL.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.194, A:Y.194 GOL.5: 5 residues within 4Å: Chain A: N.59, E.61, K.76, M.77, T.78 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.59, A:N.59, A:N.60, A:E.61, A:K.76, A:M.77 Water bridges: A:K.76, A:T.78 GOL.6: 3 residues within 4Å: Chain A: H.145, L.146, N.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.147 Water bridges: A:Y.148 GOL.7: 2 residues within 4Å: Chain A: P.94, A.115 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.115 GOL.8: 9 residues within 4Å: Chain A: M.53, P.54, E.55, R.82, I.83, G.111, G.112, G.114, A.115 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.53, A:E.55, A:I.83, A:G.112, A:G.114, A:A.115 GOL.9: 3 residues within 4Å: Chain A: P.247, E.248, Y.249 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.249 GOL.10: 8 residues within 4Å: Chain A: L.105, H.106, F.107, E.136, Y.137, M.138, C.141 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.107, A:M.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, D. et al., Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-08-16

Peptides

N-acyl homoserine lactone hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acyl homoserine lactone hydrolase

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