- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
UMP.3: 15 residues within 4Å:- Chain A: R.21, C.146, H.147, Q.165, R.166, S.167, C.168, D.169, H.207, Y.209
- Chain B: R.126
- Ligands: PO4.1, GA9.4, BME.5, BME.6
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Water bridges: B:R.127, A:G.173
- Salt bridges: B:R.126, A:R.21, A:R.166
- Hydrogen bonds: A:Q.165, A:S.167, A:D.169
UMP.14: 12 residues within 4Å:- Chain A: R.126
- Chain B: C.146, H.147, Q.165, R.166, S.167, C.168, D.169, H.207, Y.209
- Ligands: PO4.10, GA9.15
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:H.147, B:Q.165, B:S.167, B:D.169, B:H.207, B:Y.209, A:R.126
- Water bridges: B:R.21, A:R.126, A:R.127
- Salt bridges: B:R.166, A:R.126
- 2 x GA9: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7-CHLORO-1H,3H-BENZO[DE]ISOCHROMEN-1-ONE(Non-covalent)
GA9.4: 10 residues within 4Å:- Chain A: H.51, R.53, S.54, I.79, L.172, G.173, F.176, A.260
- Ligands: UMP.3, GOL.8
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.79, A:I.79, A:F.176
- Hydrogen bonds: A:R.53, A:S.54
- Water bridges: A:S.54
- Halogen bonds: A:H.51
GA9.15: 9 residues within 4Å:- Chain B: H.51, S.54, I.79, L.172, G.173, F.176, A.260
- Ligands: UMP.14, GOL.18
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.79, B:I.79
- Hydrogen bonds: B:S.54
- Water bridges: B:S.54
- Halogen bonds: B:H.51
- 2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.5: 7 residues within 4Å:- Chain A: Q.165, S.167, C.168, D.169, G.173, L.174
- Ligands: UMP.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.169
- Water bridges: A:Q.165
BME.6: 5 residues within 4Å:- Chain A: A.144, C.146, R.166, S.167
- Ligands: UMP.3
No protein-ligand interaction detected (PLIP)- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: N.211, H.212, M.213, D.214, Q.215
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.210, A:M.213, A:D.214, A:D.214, A:Q.215, A:Q.215
GOL.8: 8 residues within 4Å:- Chain A: K.48, C.50, H.51, F.171, L.172, P.175, F.176
- Ligands: GA9.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.48, A:K.48
GOL.9: 6 residues within 4Å:- Chain A: R.53, I.56, F.244, F.247, E.248, I.249
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.249, A:I.249
- Water bridges: A:L.52
GOL.17: 7 residues within 4Å:- Chain B: S.210, N.211, H.212, M.213, D.214, Q.215
- Ligands: PO4.12
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.210, B:M.213, B:D.214, B:Q.215, B:Q.215
GOL.18: 7 residues within 4Å:- Chain B: K.48, C.50, F.171, L.172, P.175, F.176
- Ligands: GA9.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.48, B:K.48
GOL.19: 5 residues within 4Å:- Chain B: I.56, F.244, F.247, E.248, I.249
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.249, B:I.249
- 1 x 2BR: 2-BROMOPHENOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Finer-Moore, J.S. et al., The structure of Cryptococcus neoformans thymidylate synthase suggests strategies for using target dynamics for species-specific inhibition. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-10-11
- Peptides
- Thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 2 x GA9: 3,3-BIS(3-BROMO-4-HYDROXYPHENYL)-7-CHLORO-1H,3H-BENZO[DE]ISOCHROMEN-1-ONE(Non-covalent)
- 2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 1 x 2BR: 2-BROMOPHENOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Finer-Moore, J.S. et al., The structure of Cryptococcus neoformans thymidylate synthase suggests strategies for using target dynamics for species-specific inhibition. Acta Crystallogr.,Sect.D (2005)
- Release Date
- 2005-10-11
- Peptides
- Thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B