SMTL ID : 2aaz.8 (7 other biounits)

Cryptococcus neoformans thymidylate synthase complexed with substrate and an antifolate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Covalent)

UMP.1: 15 residues within 4Å: Chain A: R.40, Y.127, C.187, H.188, Q.215, R.216, S.217, C.218, D.219, G.223, N.227, H.257, Y.259 Chain B: R.167, R.168 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.215, A:S.217, A:D.219, A:N.227, A:N.227, A:H.257, A:Y.259 Salt bridges: A:R.40, A:R.216, B:R.167, B:R.168 UMP.2: 15 residues within 4Å: Chain A: R.167, R.168 Chain B: R.40, Y.127, C.187, H.188, Q.215, R.216, S.217, C.218, D.219, G.223, N.227, H.257, Y.259 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.215, B:S.217, B:D.219, B:N.227, B:N.227, B:H.257 Salt bridges: B:R.40, B:R.216, A:R.167, A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finer-Moore, J.S. et al., The structure of Cryptococcus neoformans thymidylate synthase suggests strategies for using target dynamics for species-specific inhibition. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-12-06

Peptides

Thymidylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

Thymidylate synthase

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