SMTL ID : 2ac1.1

Crystal structure of a cell-wall invertase from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: K.242, K.277, Y.279, W.297, N.299, E.300, S.301, Q.396, L.397, S.400, K.401, D.461, T.463, T.464 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.463 Water bridges: A:H.243, A:H.243

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: N.143, S.145, S.146, K.168, I.169, H.170 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.171

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.116, S.118, D.119, R.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.116, A:D.119, A:D.119, A:R.123

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: N.22, D.23, Q.39, W.47, W.82, S.83, D.149, E.203, C.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.22, A:Q.39, A:W.47, A:S.83 GOL.5: 2 residues within 4Å: Chain A: W.47, W.82 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain A: G.214, S.215, N.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.215, A:N.216, A:N.216 GOL.7: 7 residues within 4Å: Chain A: W.334, R.337, E.340, R.343, E.374, R.480, W.533 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.334, A:R.337, A:R.343, A:R.480

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verhaest, M. et al., X-ray diffraction structure of a cell-wall invertase from Arabidopsis thaliana. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-08-29

Peptides

invertase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

invertase