SMTL ID : 2ag5.1

Crystal Structure of Human DHRS6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: V.85, R.144, T.179, L.185, R.188, F.202, R.205 Ligands: NAD.2 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.144, A:R.188, A:R.205 SO4.3: 6 residues within 4Å: Chain B: R.144, T.179, L.185, R.188, F.202 Ligands: NAD.4 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.144, B:R.188 SO4.5: 7 residues within 4Å: Chain C: R.144, T.179, L.185, R.188, F.202, R.205 Ligands: NAD.6 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.144, C:R.188, C:R.205 SO4.7: 7 residues within 4Å: Chain D: V.85, R.144, L.185, R.188, F.202, R.205 Ligands: NAD.8 4 PLIP interactions: 4 interactions with chain D Water bridges: D:S.133 Salt bridges: D:R.144, D:R.188, D:R.205

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 28 residues within 4Å: Chain A: A.13, A.15, Q.16, G.17, I.18, D.37, I.38, N.39, L.57, D.58, V.59, V.81, A.82, G.83, L.104, M.131, S.132, Y.147, K.151, P.177, G.178, T.179, V.180, T.182, P.183, S.184, R.188 Ligands: SO4.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.177 Hydrogen bonds: A:A.13, A:Q.16, A:Q.16, A:Q.16, A:I.18, A:I.38, A:D.58, A:D.58, A:V.59, A:V.81, A:Y.147, A:K.151, A:G.178, A:V.180, A:S.184, A:S.184, A:R.188 Water bridges: A:G.19, A:N.39, A:R.188, A:R.188 NAD.4: 29 residues within 4Å: Chain B: A.13, A.15, Q.16, G.17, I.18, D.37, I.38, N.39, L.57, D.58, V.59, T.60, V.81, A.82, G.83, L.104, M.131, S.132, Y.147, K.151, P.177, G.178, T.179, V.180, T.182, P.183, S.184, R.188 Ligands: SO4.3 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:P.177, B:V.180 Hydrogen bonds: B:Q.16, B:Q.16, B:I.18, B:I.38, B:D.58, B:V.59, B:V.81, B:K.151, B:V.180, B:V.180, B:T.182, B:T.182, B:S.184, B:S.184, B:R.188 Water bridges: B:A.13, B:G.19, B:N.39, B:G.83, B:S.184, B:R.188, B:R.188 NAD.6: 29 residues within 4Å: Chain C: A.13, A.15, Q.16, G.17, I.18, D.37, I.38, N.39, L.57, D.58, V.59, T.60, V.81, A.82, G.83, L.104, M.131, S.132, Y.147, K.151, P.177, G.178, T.179, V.180, T.182, P.183, S.184, R.188 Ligands: SO4.5 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:P.177, C:V.180 Hydrogen bonds: C:A.15, C:Q.16, C:Q.16, C:I.18, C:I.38, C:D.58, C:V.59, C:V.81, C:K.151, C:G.178, C:V.180, C:T.182, C:T.182, C:S.184, C:S.184, C:R.188 Water bridges: C:A.13, C:G.19, C:N.39, C:T.60, C:R.188, C:R.188 NAD.8: 28 residues within 4Å: Chain D: A.13, A.15, Q.16, G.17, I.18, D.37, I.38, N.39, L.57, D.58, V.59, V.81, A.82, G.83, L.104, M.131, S.132, Y.147, K.151, P.177, G.178, T.179, V.180, T.182, P.183, S.184, R.188 Ligands: SO4.7 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:P.177 Hydrogen bonds: D:A.15, D:Q.16, D:Q.16, D:I.18, D:I.38, D:D.58, D:D.58, D:V.59, D:V.81, D:Y.147, D:K.151, D:V.180, D:V.180, D:T.182, D:T.182, D:S.184, D:S.184, D:R.188 Water bridges: D:A.13, D:G.19, D:N.39, D:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, K. et al., Characterization of human DHRS6, an orphan short chain dehydrogenase/reductase enzyme: a novel, cytosolic type 2 R-beta-hydroxybutyrate dehydrogenase. J.Biol.Chem. (2006)

Release Date

2005-08-09

Peptides

dehydrogenase/reductase (SDR family) member 6: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

dehydrogenase/reductase (SDR family) member 6