SMTL ID : 2agk.1

Structure of S. cerevisiae His6 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.54, Q.80, S.98 Ligand excluded by PLIP

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 13 residues within 4Å: Chain A: C.6, D.8, H.56, I.58, H.177, A.211, G.212, G.213, A.214, T.234, G.236, S.237 Ligands: EDO.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.234 Hydrogen bonds: A:D.8, A:G.212, A:G.213, A:A.214, A:T.234, A:S.237 Water bridges: A:G.236, A:S.238 Salt bridges: A:H.56

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: C.6, I.7, D.8, V.14, K.15, S.237, F.242 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.8 EDO.4: 6 residues within 4Å: Chain A: I.58, D.133, L.175, H.177, A.211 Ligands: CIT.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.133 EDO.5: 3 residues within 4Å: Chain A: T.103, D.133, S.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.133, A:S.135 Water bridges: A:S.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quevillon-Cheruel, S. et al., Crystal structure of the yeast His6 enzyme suggests a reaction mechanism. Protein Sci. (2006)

Release Date

2006-06-20

Peptides

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase