SMTL ID : 2agz.2 (1 other biounit)

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. F222 form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-8-8-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.67, D.74 Chain E: H.67, D.74 Ligands: ZN.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Metal complexes: A:H.67, A:D.74, E:H.67, E:D.74 ZN.3: 5 residues within 4Å: Chain B: H.67, D.74 Chain N: H.67, D.74 Ligands: ZN.15 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain N Metal complexes: B:H.67, B:D.74, N:H.67, N:D.74 ZN.5: 5 residues within 4Å: Chain A: H.67, D.74 Chain E: H.67, D.74 Ligands: ZN.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Metal complexes: A:H.67, A:D.74, E:H.67, E:D.74 ZN.7: 5 residues within 4Å: Chain F: H.67, D.74 Chain J: H.67, D.74 Ligands: ZN.11 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain J Metal complexes: F:H.67, F:D.74, J:H.67, J:D.74 ZN.9: 5 residues within 4Å: Chain I: H.67, D.74 Chain M: H.67, D.74 Ligands: ZN.13 5 PLIP interactions: 3 interactions with chain M, 2 interactions with chain I Metal complexes: M:H.67, M:D.74, M:D.74, I:H.67, I:D.74 ZN.11: 5 residues within 4Å: Chain F: H.67, D.74 Chain J: H.67, D.74 Ligands: ZN.7 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain J Metal complexes: F:H.67, F:D.74, J:H.67, J:D.74 ZN.13: 5 residues within 4Å: Chain I: H.67, D.74 Chain M: H.67, D.74 Ligands: ZN.9 5 PLIP interactions: 2 interactions with chain M, 3 interactions with chain I Metal complexes: M:H.67, M:D.74, I:H.67, I:D.74, I:D.74 ZN.15: 5 residues within 4Å: Chain B: H.67, D.74 Chain N: H.67, D.74 Ligands: ZN.3 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain N Metal complexes: B:H.67, B:D.74, N:H.67, N:D.74

8 x TSC: (1S)-1-AMINO-2-(1H-INDOL-3-YL)ETHANOL(Covalent)

TSC.2: 15 residues within 4Å: Chain A: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain D: F.25, L.28, N.52, G.106, L.107 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:N.112, A:F.122, D:L.28, D:L.107 Hydrogen bonds: A:D.81, A:D.110, A:W.113, A:T.125 pi-Stacking: D:F.25 TSC.4: 14 residues within 4Å: Chain B: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain C: F.25, L.28, G.106, L.107 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:N.112, B:F.122, B:F.122, C:L.28, C:L.107 Hydrogen bonds: B:D.37, B:D.81, B:D.81, B:W.113, B:T.125 pi-Stacking: B:F.122, C:F.25, C:F.25 TSC.6: 15 residues within 4Å: Chain E: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain H: F.25, L.28, N.52, G.106, L.107 8 PLIP interactions: 3 interactions with chain H, 5 interactions with chain E Hydrophobic interactions: H:L.28, H:L.107, E:N.112, E:F.122 pi-Stacking: H:F.25 Hydrogen bonds: E:D.81, E:D.110, E:W.113 TSC.8: 14 residues within 4Å: Chain F: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain G: F.25, L.28, G.106, L.107 12 PLIP interactions: 8 interactions with chain F, 4 interactions with chain G Hydrophobic interactions: F:N.112, F:F.122, F:F.122, G:L.28, G:L.107 Hydrogen bonds: F:D.37, F:D.81, F:D.81, F:W.113 pi-Stacking: F:F.122, G:F.25, G:F.25 TSC.10: 15 residues within 4Å: Chain I: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain L: F.25, L.28, N.52, G.106, L.107 8 PLIP interactions: 5 interactions with chain I, 3 interactions with chain L Hydrophobic interactions: I:N.112, I:F.122, L:L.28, L:L.107 Hydrogen bonds: I:D.81, I:D.110, I:W.113 pi-Stacking: L:F.25 TSC.12: 14 residues within 4Å: Chain J: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain K: F.25, L.28, G.106, L.107 12 PLIP interactions: 8 interactions with chain J, 4 interactions with chain K Hydrophobic interactions: J:N.112, J:F.122, J:F.122, K:L.28, K:L.107 Hydrogen bonds: J:D.37, J:D.81, J:D.81, J:W.113 pi-Stacking: J:F.122, K:F.25, K:F.25 TSC.14: 15 residues within 4Å: Chain M: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain P: F.25, L.28, N.52, G.106, L.107 9 PLIP interactions: 6 interactions with chain M, 3 interactions with chain P Hydrophobic interactions: M:N.112, M:F.122, P:L.28, P:L.107 Hydrogen bonds: M:D.81, M:D.110, M:W.113, M:T.125 pi-Stacking: P:F.25 TSC.16: 14 residues within 4Å: Chain N: D.37, W.62, D.81, N.109, D.110, V.111, N.112, W.113, F.122, T.125 Chain O: F.25, L.28, G.106, L.107 13 PLIP interactions: 9 interactions with chain N, 4 interactions with chain O Hydrophobic interactions: N:N.112, N:F.122, N:F.122, O:L.28, O:L.107 Hydrogen bonds: N:D.37, N:D.81, N:D.81, N:W.113, N:T.125 pi-Stacking: N:F.122, O:F.25, O:F.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masgrau, L. et al., Atomic description of an enzyme reaction dominated by proton tunneling. Science (2006)

Release Date

2006-04-25

Peptides

Aromatic amine dehydrogenase: ABEFIJMN
Aromatic amine dehydrogenase: CDGHKLOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

E
D

F
H

I
D

J
H

M
D

N
H

C
A

D
B

G
A

H
B

K
A

L
B

O
A

P
B

Aromatic amine dehydrogenase

Aromatic amine dehydrogenase

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