SMTL ID : 2ai7.1

S.pneumoniae Polypeptide Deformylase complexed with SB-485345

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.77, C.130, H.173, H.177 Ligands: SB7.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.130, A:H.173, A:H.177

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.118, R.146 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.117, A:V.119 Salt bridges: A:R.146

1 x SB7: [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL(Non-covalent)

SB7.3: 13 residues within 4Å: Chain A: V.71, G.72, Q.77, L.124, E.128, G.129, C.130, L.131, I.169, H.173, E.174, H.177 Ligands: NI.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.71, A:L.124, A:E.128, A:I.169, A:H.173 Hydrogen bonds: A:Q.77, A:L.131, A:E.174 Salt bridges: A:E.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.J. et al., Structural Variation and inhibitor binding in polypeptide deformylase from four different bacterial species. Protein Sci. (2003)

Release Date

2005-09-06

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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