SMTL ID : 2aig.2 (1 other biounit)

ADAMALYSIN II WITH PEPTIDOMIMETIC INHIBITOR POL647

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x 0GR: N-(furan-2-ylcarbonyl)-L-leucyl-L-tryptophan(Non-covalent)

0GR.1: 17 residues within 4Å: Chain A: G.105, K.106, I.107, I.108, G.109, V.138, T.139, H.142, E.143, H.146, H.152, I.165, R.167, P.168, G.169, L.170 Ligands: ZN.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:K.106, A:I.107, A:I.108, A:V.138, A:T.139, A:H.142, A:L.170 Hydrogen bonds: A:K.106, A:I.108, A:G.109, A:E.143, A:R.167, A:L.170 Salt bridges: A:H.142, A:H.146, A:H.152 pi-Stacking: A:H.142, A:H.142 0GR.5: 17 residues within 4Å: Chain B: G.105, K.106, I.107, I.108, G.109, V.138, T.139, H.142, E.143, H.146, H.152, I.165, R.167, P.168, G.169, L.170 Ligands: ZN.6 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:K.106, B:I.107, B:I.108, B:V.138, B:T.139, B:H.142, B:L.170 Hydrogen bonds: B:K.106, B:I.108, B:G.109, B:E.143, B:R.167, B:L.170 Salt bridges: B:H.142, B:H.146, B:H.152 pi-Stacking: B:H.142, B:H.142

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.142, H.146, H.152 Ligands: 0GR.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:H.152 ZN.6: 4 residues within 4Å: Chain B: H.142, H.146, H.152 Ligands: 0GR.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.142, B:H.146, B:H.152

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: E.9, D.93, C.197, N.200 Chain B: Q.196 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.93, A:D.93, A:C.197, H2O.1 CA.7: 5 residues within 4Å: Chain A: Q.196 Chain B: E.9, D.93, C.197, N.200 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.9, B:D.93, B:D.93, B:C.197, H2O.7

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.6, L.199 Chain B: R.91 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.6 Hydrogen bonds: B:R.91 SO4.8: 3 residues within 4Å: Chain A: R.91 Chain B: R.6, L.199 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.91 Salt bridges: B:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomis-Ruth, F.X. et al., Structures of adamalysin II with peptidic inhibitors. Implications for the design of tumor necrosis factor alpha convertase inhibitors. Protein Sci. (1998)

Release Date

1998-04-15

Peptides

ADAMALYSIN II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
P

ADAMALYSIN II

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