SMTL ID : 2aii.1

wild-type Formylglycine generating enzyme reacted with iodoacetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.49, E.52, K.53, N.56 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.45, N.208, I.209, G.211, A.213, E.215 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.45, A:N.208, A:G.211, A:A.213, A:E.215, H2O.1 CA.3: 4 residues within 4Å: Chain A: N.174, I.175, D.188, F.190 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.175, A:D.188, A:F.190, H2O.1, H2O.1

1 x ACM: ACETAMIDE(Covalent)

ACM.4: 7 residues within 4Å: Chain A: W.214, S.248, M.250, C.251, C.256, R.258, N.275 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.214, A:R.258 Hydrogen bonds: A:S.248, A:N.275 Water bridges: A:W.214, A:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roeser, D. et al., A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2005-12-13

Peptides

Sulfatase modifying factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Sulfatase modifying factor 1