SMTL ID : 2aiu.1

Crystal Structure of Mouse Testicular Cytochrome C at 1.6 Angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: K.74 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.74, A:K.74 Salt bridges: A:K.74 PO4.2: 1 residues within 4Å: Chain A: T.29 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.80, A:K.80

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.3: 30 residues within 4Å: Chain A: K.14, C.15, Q.17, C.18, H.19, T.29, G.30, P.31, L.33, L.36, R.39, T.41, G.42, Q.43, F.47, Y.49, T.50, N.53, W.60, L.65, Y.68, L.69, T.79, K.80, M.81, I.82, F.83, I.86, L.95, L.99 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:Q.17, A:L.33, A:L.36, A:L.36, A:F.47, A:L.65, A:L.69, A:M.81, A:F.83, A:F.83, A:I.86, A:L.99 Hydrogen bonds: A:R.39, A:G.42, A:Q.43, A:T.50, A:N.53, A:N.53, A:T.79, A:T.79, A:K.80 Water bridges: A:A.44, A:A.44 Salt bridges: A:K.80 pi-Stacking: A:Y.68 pi-Cation interactions: A:H.19 Metal complexes: A:H.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Remarkably high activities of testicular cytochrome c in destroying reactive oxygen species and in triggering apoptosis. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-07-18

Peptides

Cytochrome c, testis-specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c, testis-specific