SMTL ID : 2aiz.1

Solution structure of peptidoglycan associated lipoprotein from Haemophilus influenza bound to UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x ALA- DGL- 6CL- DAL- DAL: L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine(Non-covalent)

ALA-DGL-6CL-DAL-DAL.1: 11 residues within 4Å: Chain A: F.36, D.37, D.71, R.73, G.74, Y.78, N.79, L.82, Y.124 Ligands: AMU.2, UDP.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.36, A:R.73, A:Y.78, A:Y.78, A:Y.124 Hydrogen bonds: A:D.37, A:D.71

1 x AMU: N-acetyl-beta-muramic acid(Non-functional Binders)

AMU.2: 3 residues within 4Å: Ligands: ALA-DGL-6CL-DAL-DAL.1, ALA-DGL-6CL-DAL-DAL.1, UDP.3 No protein-ligand interaction detected (PLIP)

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 4 residues within 4Å: Chain A: Y.78 Ligands: ALA-DGL-6CL-DAL-DAL.1, ALA-DGL-6CL-DAL-DAL.1, AMU.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parsons, L.M. et al., Peptidoglycan recognition by pal, an outer membrane lipoprotein. Biochemistry (2006)

Release Date

2006-03-14

Peptides

Outer membrane protein P6 (Fragment): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

Outer membrane protein P6 (Fragment)