SMTL ID : 2ajp.2 (2 other biounits)

Crystal structure of a human pyridoxal kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.132, N.164, S.201 Ligands: ANP.22 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.132

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 4 residues within 4Å: Chain A: R.30, G.31, Y.32, R.36 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: Q.43, F.47, E.48, I.49 Ligand excluded by PLIP UNX.4: 2 residues within 4Å: Chain A: V.308, K.311 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: H.27, V.28, I.29, R.36 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: G.246, T.247, G.248, D.249 Ligands: ANP.22 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: R.20, E.48, D.50, Y.91 Ligand excluded by PLIP UNX.8: 6 residues within 4Å: Chain A: T.96, G.97, Y.124, C.126, D.127, Y.150 Ligand excluded by PLIP UNX.9: 6 residues within 4Å: Chain A: V.28, R.30, G.31, N.59, H.60, E.304 Ligand excluded by PLIP UNX.10: 1 residues within 4Å: Chain A: H.278 Ligand excluded by PLIP UNX.11: 5 residues within 4Å: Chain A: Q.25, G.34, G.97, Y.98, D.249 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: N.35, R.36, T.39, F.40 Ligand excluded by PLIP UNX.13: 7 residues within 4Å: Chain A: N.89, K.90, Y.91, L.115, Q.118, N.119, L.122 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: P.156, L.157, A.158, D.159 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: S.178, Q.179, P.205 Ligand excluded by PLIP UNX.16: 5 residues within 4Å: Chain A: F.244, V.245, L.303, E.304 Ligands: UNX.17 Ligand excluded by PLIP UNX.17: 5 residues within 4Å: Chain A: Y.32, V.245, E.304, L.305 Ligands: UNX.16 Ligand excluded by PLIP UNX.18: 4 residues within 4Å: Chain A: H.262, P.263, N.264, N.265 Ligand excluded by PLIP UNX.19: 1 residues within 4Å: Chain A: L.213 Ligand excluded by PLIP UNX.20: 4 residues within 4Å: Chain A: L.45, F.47, H.260, K.261 Ligand excluded by PLIP UNX.21: 5 residues within 4Å: Chain A: D.127, T.162, T.200, G.248 Ligands: ANP.22 Ligand excluded by PLIP

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.22: 22 residues within 4Å: Chain A: D.127, V.129, G.131, D.132, N.164, E.167, T.200, S.201, L.213, V.215, I.237, K.239, V.240, A.242, F.244, T.247, G.248, F.251, L.281 Ligands: MG.1, UNX.6, UNX.21 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.164, A:T.200, A:T.200, A:S.201, A:V.240, A:V.240, A:T.247 pi-Stacking: A:F.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ismail, S. et al., Crystal structure of a human pyridoxal kinase. To be Published

Release Date

2005-08-09

Peptides

Pyridoxal kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pyridoxal kinase

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