SMTL ID : 2amb.1

Crystal structure of human androgen receptor ligand binding domain in complex with tetrahydrogestrinone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.43, F.44, K.124, R.126 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.44 Water bridges: A:R.126, A:R.126 Salt bridges: A:K.124, A:R.126

1 x 17H: 17-HYDROXY-18A-HOMO-19-NOR-17ALPHA-PREGNA-4,9,11-TRIEN-3-ONE(Non-covalent)

17H.2: 15 residues within 4Å: Chain A: L.48, L.51, N.52, L.54, W.88, M.89, M.92, M.96, R.99, F.111, M.127, L.220, F.223, T.224, L.227 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.48, A:L.51, A:L.54, A:W.88, A:M.92, A:M.96, A:F.111, A:L.220, A:F.223, A:L.227 Hydrogen bonds: A:R.99, A:T.224, A:T.224 Water bridges: A:R.99

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 3 residues within 4Å: Chain A: C.33, P.113, D.114 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 2 residues within 4Å: Chain A: H.136, W.143 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.136 pi-Cation interactions: A:W.143, A:W.143

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: P.29, Q.58, V.62, M.92, R.99 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.58, A:R.99 Water bridges: A:G.30, A:V.32, A:R.99, A:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira de Jesus-Tran, K. et al., Comparison of crystal structures of human androgen receptor ligand-binding domain complexed with various agonists reveals molecular determinants responsible for binding affinity. Protein Sci. (2006)

Release Date

2006-05-16

Peptides

Androgen receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Androgen receptor

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