SMTL ID : 2amd.1

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 9IN: N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-D-LEUCINAMIDE(Covalent)

9IN.1: 23 residues within 4Å: Chain A: T.30, T.31, L.32, H.46, M.54, F.145, N.147, G.148, S.149, C.150, H.168, H.169, M.170, E.171, L.172, P.173, H.177, D.192, R.193, Q.194, T.195, A.196, Q.197 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.30, A:M.54, A:L.172, A:Q.194, A:Q.197 Hydrogen bonds: A:F.145, A:G.148, A:C.150, A:H.169, A:E.171, A:E.171, A:Q.194 9IN.2: 22 residues within 4Å: Chain B: T.30, T.31, L.32, H.46, M.54, F.145, N.147, G.148, S.149, C.150, H.168, H.169, M.170, E.171, P.173, H.177, D.192, R.193, Q.194, T.195, A.196, Q.197 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.46, B:P.173, B:Q.194, B:Q.197 Hydrogen bonds: B:F.145, B:G.148, B:C.150, B:H.169, B:E.171, B:E.171, B:Q.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Design of Wide-Spectrum Inhibitors Targeting Coronavirus Main Proteases. Plos Biol. (2005)

Release Date

2005-09-13

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase

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