SMTL ID : 2amx.1

Crystal structure of Plasmodium Yoelii Adenosine deaminase (PY02076)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

5 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: H.55, H.57, H.239, H.266, D.323 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.55, A:H.57, A:H.239, A:D.323 CO.2: 2 residues within 4Å: Chain A: H.177, E.370 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.177, A:E.370, A:E.370 CO.8: 5 residues within 4Å: Chain B: H.55, H.57, H.239, H.266, D.323 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.55, B:H.57, B:H.239, B:D.323 CO.9: 3 residues within 4Å: Chain B: H.212, L.219, H.222 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.212, B:H.222, H2O.16, H2O.17 CO.10: 3 residues within 4Å: Chain B: N.174, H.177, E.370 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.177, B:E.370, B:E.370

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 4 residues within 4Å: Chain A: H.212, I.217, L.219, H.222 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain A: S.184, S.196, G.197, F.210, V.225 No protein-ligand interaction detected (PLIP) UNX.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: D.185, G.187, S.192 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain A: F.101 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain B: D.323 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedadi, M. et al., Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol. (2007)

Release Date

2005-09-20

Peptides

adenosine deaminase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

adenosine deaminase