SMTL ID : 2anb.1 (1 other biounit)

Crystal Structure Of Oligomeric E.coli Guanylate Kinase In Complex With GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:P.12, A:G.14, A:A.15, A:G.16, A:K.17, A:S.18 Salt bridges: A:K.17, A:R.138 SO4.3: 8 residues within 4Å: Chain B: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:P.12, B:G.14, B:A.15, B:G.16, B:K.17, B:S.18 Salt bridges: B:K.17, B:R.138 SO4.5: 8 residues within 4Å: Chain C: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:P.12, C:G.14, C:A.15, C:G.16, C:K.17, C:S.18 Salt bridges: C:K.17, C:R.138 SO4.7: 8 residues within 4Å: Chain D: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:P.12, D:G.14, D:A.15, D:G.16, D:K.17, D:S.18 Salt bridges: D:K.17, D:R.138 SO4.9: 8 residues within 4Å: Chain E: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:P.12, E:G.14, E:A.15, E:G.16, E:K.17, E:S.18 Salt bridges: E:K.17, E:R.138 SO4.11: 8 residues within 4Å: Chain F: P.12, S.13, G.14, A.15, G.16, K.17, S.18, R.138 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:P.12, F:G.14, F:A.15, F:G.16, F:K.17, F:S.18 Salt bridges: F:K.17, F:R.138

6 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.2: 18 residues within 4Å: Chain A: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:A.11, A:K.17, A:K.17, A:S.38, A:S.38, A:Y.54, A:Y.82, A:D.104, A:G.107 Salt bridges: A:R.42, A:R.45, A:E.73, A:D.104, A:R.149 5GP.4: 18 residues within 4Å: Chain B: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.11, B:K.17, B:K.17, B:S.38, B:S.38, B:Y.54, B:Y.82, B:D.104, B:G.107 Salt bridges: B:R.42, B:R.45, B:E.73, B:D.104, B:R.149 5GP.6: 18 residues within 4Å: Chain C: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:A.11, C:K.17, C:K.17, C:S.38, C:S.38, C:Y.54, C:Y.82, C:D.104, C:G.107 Salt bridges: C:R.42, C:R.45, C:E.73, C:D.104, C:R.149 5GP.8: 18 residues within 4Å: Chain D: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:A.11, D:K.17, D:K.17, D:S.38, D:S.38, D:Y.54, D:T.84, D:D.102, D:D.104, D:G.107 Salt bridges: D:R.42, D:R.45, D:E.73, D:D.104, D:R.149 5GP.10: 18 residues within 4Å: Chain E: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:A.11, E:K.17, E:K.17, E:S.38, E:S.38, E:Y.54, E:T.84, E:D.102, E:D.104, E:G.107 Salt bridges: E:R.42, E:R.45, E:E.73, E:D.104, E:R.149 5GP.12: 18 residues within 4Å: Chain F: A.11, K.17, S.38, R.42, R.45, Y.54, E.73, A.75, V.77, F.78, Y.82, G.83, T.84, D.102, I.103, D.104, G.107, R.149 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:A.11, F:K.17, F:K.17, F:S.38, F:S.38, F:Y.54, F:T.84, F:D.102, F:D.104, F:G.107 Salt bridges: F:R.42, F:R.45, F:E.73, F:D.104, F:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hible, G. et al., Calorimetric and crystallographic analysis of the oligomeric structure of Escherichia coli GMP kinase. J.Mol.Biol. (2005)

Release Date

2005-08-30

Peptides

Guanylate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Guanylate kinase

Related Entries With Identical Sequence